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Sweep software haplotype

sweep software haplotype

Zip : 71 polymorphisms including delta32 (rs333) genotyped in and around CCR5 in Europeans.
Supplementary files All these files are supplied with the linux executable, but may not be supplied with other executables, so here they are for separate download if you need them.You will also need to download the "supplementary files" below - particularly the instructions!Results and simulated data files from the paper The following resources are provided for the convenience of researchers who wish to do comparisons on the data sets used to produce figures 2 and 3 in the paper.Tar.gz tar -xvf nux.The alleles at each locus are represented by ascii characters: to convert into repeats you will need to take the ascii value of each character (sorry about this - it was so that each allele can be represented by a single character).Nature Genetics, 36 : 700-706.It lies in the haplotype block including SNPs #50-57.Each dataset consists of Y lines.Microsoft Windows (version.1.1).Summary of results from Figures 2 and 3 Here is a text file of the results shown in Figures 2 and 3 in the paper.If you do manage to compile the program successfully on another platform, and wish to contribute an executable for others to use, please email me the executable, and I will add it to this website.In all cases, please specify the version of the software used, and any deviations from the default options.Clicking on the Y-axis how often to chimney sweep toggles between rehh and EHH.Nature 419(6909 832-7 ).The 100 data sets are split into 2 files (A1,2 each containing 50 data sets.Evidence for substantial fine-scale variation in recombination rates across the human genome.Most recent version information: The most recent version of phase.1.1, which features improved mixing for larger data sets compared with.1, as well as perfoming some (very) rudimentary checking of the input file format.The area of the squares is proportional to the frequency of the haplotype.X is 4Nr where r is the recombination rate across the region, and Y is the number of haplotypes (2*the number of individuals).Source Code: phase source code is available here.Delta32 is SNP #55 in the file and the deletion is represented by a T allele.
Linux (version.1.1) (compiled with g nux.